生物信息學(xué) 相關(guān)數(shù)據(jù)庫資源介紹PPT課件

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1、2021/3/24授課：XXX1生物信息學(xué)生物信息學(xué)相關(guān)數(shù)據(jù)庫資源介紹相關(guān)數(shù)據(jù)庫資源介紹劉 吉 平Reference： www.biosino.org2021/3/24授課：XXX2 生物信息學(xué)相關(guān)數(shù)據(jù)庫資源生物信息學(xué)相關(guān)數(shù)據(jù)庫資源 核酸及其相關(guān)數(shù)據(jù)庫（核酸序列、基因組相關(guān)數(shù)核酸及其相關(guān)數(shù)據(jù)庫（核酸序列、基因組相關(guān)數(shù)據(jù)庫、核酸三維結(jié)構(gòu)、其他）據(jù)庫、核酸三維結(jié)構(gòu)、其他）蛋白質(zhì)相關(guān)數(shù)據(jù)庫蛋白質(zhì)相關(guān)數(shù)據(jù)庫（蛋白質(zhì)序列、蛋白質(zhì)三維結(jié)構(gòu)、蛋（蛋白質(zhì)序列、蛋白質(zhì)三維結(jié)構(gòu)、蛋白質(zhì)組（二維凝膠電泳數(shù)據(jù)庫）、信號(hào)傳導(dǎo)及蛋白質(zhì)白質(zhì)組（二維凝膠電泳數(shù)據(jù)庫）、信號(hào)傳導(dǎo)及蛋白質(zhì)-蛋白蛋白質(zhì)相互作用相關(guān)數(shù)據(jù)庫、質(zhì)相互作用

2、相關(guān)數(shù)據(jù)庫、DNA和蛋白質(zhì)相互作用數(shù)據(jù)庫）和蛋白質(zhì)相互作用數(shù)據(jù)庫）基因或蛋白質(zhì)一些特定數(shù)據(jù)庫基因或蛋白質(zhì)一些特定數(shù)據(jù)庫糖類及其相關(guān)數(shù)據(jù)庫糖類及其相關(guān)數(shù)據(jù)庫蛋白質(zhì)翻譯后修飾相關(guān)數(shù)據(jù)庫蛋白質(zhì)翻譯后修飾相關(guān)數(shù)據(jù)庫基因表達(dá)數(shù)據(jù)庫基因表達(dá)數(shù)據(jù)庫人類基因突變及疾病相關(guān)數(shù)據(jù)庫人類基因突變及疾病相關(guān)數(shù)據(jù)庫進(jìn)化相關(guān)數(shù)據(jù)庫及資源專利數(shù)據(jù)庫進(jìn)化相關(guān)數(shù)據(jù)庫及資源專利數(shù)據(jù)庫資源目錄服務(wù)器或網(wǎng)頁2021/3/24授課：XXX3一、核酸及其相關(guān)數(shù)據(jù)庫一、核酸及其相關(guān)數(shù)據(jù)庫 1、核酸序列數(shù)據(jù)庫、核酸序列數(shù)據(jù)庫n EMBL - EMBL Nucleotide sequence database (EBI) * nGenBank

3、 - GenBank Nucleotide Sequence database (NCBI) * nDDBJ - DNA Data Bank of Japan * nBIOSINO 我國的核酸序列公共數(shù)據(jù)庫ndbEST - Database of Expressed Sequence Tags (NCBI) ndbSTS - Database of Sequence Tagged Sites (NCBI) 2021/3/24授課：XXX42.基因組及相關(guān)數(shù)據(jù)庫 Genomic DatabasesnGenomeWeb(HGMP) - A catalogue of useful Web sites

4、 for Genomics with a set of collections of genome databases nGSDB - Genome Sequence database (NCGR)nGOLD - Genomes On-line dbn一些數(shù)據(jù)庫的直接鏈接2021/3/24授課：XXX53.核酸三維結(jié)構(gòu)數(shù)據(jù)庫nNDB - Nucleic Acid Databank (3D structures) nBNASDB - Nucleic acid structure db from University of Pune 2021/3/24授課：XXX64.其他nAsDb - Aber

5、rant Splicing db nACUTS - Ancient conserved untranslated DNA sequences db nCodon Usage Db - The frequency of codon use in each organism is made searchable through this World Wide Web site. nEPD - Eukaryotic Promoter db nHOVERGEN - Homologous Vertebrate Genes db nIMGT - ImMunoGeneTics db Mirror at EB

6、I nISIS - Intron Sequence and Information System nRDP - Ribosomal db Project ngRNAs db - Guide RNA db nPLACE - Plant cis-acting regulatory DNA elements db 2021/3/24授課：XXX7其它其它nPlantCARE - Plant cis-acting regulatory DNA elements db nsRNA db - Small RNA db nssu rRNA - Small ribosomal subunit db nlsu

7、rRNA - Large ribosomal subunit db n5S rRNA - 5S ribosomal RNA db ntmRNA Website ntmRDB - tmRNA dB ntRNA - tRNA compilation from the University of Bayreuth nuRNADB - uRNA db 2021/3/24授課：XXX8其他其他nRNA editing - RNA editing site nRNAmod db - RNA modification db nTelDB - Multimedia Telomere Resource nTRA

8、DAT - TRAnscription Databases and Analysis Tools nSubviral RNA db - Small circular RNAs db (viroid and viroid-like) 2021/3/24授課：XXX9TransgenicsnCre Transgenic Database - Cre transgenic mouse lines nTransgenic/Targeted Mutation Database - Information on transgenic animals and targeted mutations 2021/

9、3/24授課：XXX10二.蛋白質(zhì)序列和相關(guān)數(shù)據(jù)庫nSWISS-PROT - SWISS-PROT annotated protein sequence db nPIR-international -The Protein Information Resource (protein sequence) nMIPS - Martinsried institute for protein sequence and homology data and yeast genome information 2021/3/24授課：XXX11蛋白質(zhì)及其相關(guān)數(shù)據(jù)庫蛋白質(zhì)及其相關(guān)數(shù)據(jù)庫 nPROSITE - P

10、ROSITE dictionary of protein sites and patterns nInterPro - Integrated Resources of Proteins Domains and Functional Sites nBLOCKS - BLOCKS db nDOMO - Protein domain db (Automatically generated) nPfam - Protein families db (HMM derived) Mirror at Sanger nPRINTS - Protein Motif fingerprint db nProDom

11、- Protein domain db (Automatically generated) nPROTOMAP - An automatic hierarchical classification of SWISS-PROT proteins nSBASE - SBASE domain db (Protein domain sequence library) nSMART - Protein signalling and extracellular domain patterns (Simple Modular Architecture Research Tool) nProClass - P

12、rotein sequence alignments and curation of protein families 2021/3/24授課：XXX12.蛋白質(zhì)三維結(jié)構(gòu)和相關(guān)數(shù)據(jù)庫蛋白質(zhì)三維結(jié)構(gòu)和相關(guān)數(shù)據(jù)庫nPDB - Protein Data Bank Mirrors in EBI nBioMagResBank - Repository for data on proteins, peptides, and nucleic acids from NMR spectroscopy nSWISS-MODEL Repository - Automatically generated protei

13、n models db nModBase - Db of comparative protein structure models nCATH - UCL BSM structural classification of proteins nSCOP - Structural classification of proteins Mirror at USA | Israel | Singapore | Australia nMol_R_Us - Molecules R Us, browser for PDB nBMM Domain Server - Biomolecular Modelling

14、 Laboratory (ICRF) protein domain server nPRESAGE - Collaborative resource for structural genomics 2021/3/24授課：XXX13蛋白質(zhì)三維結(jié)構(gòu)和相關(guān)數(shù)據(jù)庫蛋白質(zhì)三維結(jié)構(gòu)和相關(guān)數(shù)據(jù)庫 nSBASE - SBASE domain db (Protein domain sequence library) nSMART - Protein signalling and extracellular domain patterns (Simple Modular Architecture Researc

15、h Tool) nProClass - Protein sequence alignments and curation of protein families nKabat - Kabat db of protein of immunological interest nPMD - Protein Mutant db 2021/3/24授課：XXX14蛋白質(zhì)二維凝膠電泳數(shù)據(jù)庫蛋白質(zhì)二維凝膠電泳數(shù)據(jù)庫nWORLD-2DPAGE - A complete index of 2D-PAGE db and servers nPhoretix links - Phoretix page of link

16、s to 2D gel db 2021/3/24授課：XXX15三、信號(hào)傳導(dǎo)及蛋白質(zhì)三、信號(hào)傳導(dǎo)及蛋白質(zhì)-蛋白質(zhì)相互作蛋白質(zhì)相互作用相關(guān)數(shù)據(jù)庫用相關(guān)數(shù)據(jù)庫nDIP - Db of Interacting Proteins nINTERACT - Protein-Protein interaction db nProNet - Protein-Protein interaction dbnCANSITE - Signal Transductions WebnSPAD - Signaling pathway db nCSNDB - Cell Signaling Networks db 2021/3

17、/24授課：XXX16四、四、DNA和蛋白質(zhì)相互作用數(shù)據(jù)庫和蛋白質(zhì)相互作用數(shù)據(jù)庫nDPInteract - DNA-Proteins interactions db2021/3/24授課：XXX17五、特定基因或蛋白質(zhì)的數(shù)據(jù)庫五、特定基因或蛋白質(zhì)的數(shù)據(jù)庫nAAA - AAA family of ATPases server Acetylcholinesterases nALDH - Aldehyde dehydrogenase gene superfamily db nAminoacyl-tRNA synthetases in SWISS-PROT - List of aminoacyl-tR

18、NA synthetases in SWISS-PROT nAARSDB - Aminoacyl-tRNA synthetases db nAllergens in SWISS-PROT - Nomenclature and index of allergens in SWISS-PROT 2021/3/24授課：XXX18特定基因或蛋白質(zhì)的數(shù)據(jù)庫特定基因或蛋白質(zhì)的數(shù)據(jù)庫nAMSDb - Antimicrobial sequences db nAntibody resource page - Links to antibody related Web resources nAustralian

19、 venom and toxin db nBacillus thuringiensis toxin specificity dbnTFII - Basal transcription factors nBlood group antigens in SWISS-PROT nBCGD - Breast cancer genes db from MBCR nBRENDA - Db of enzyme functional data 2021/3/24授課：XXX19特定基因或蛋白質(zhì)的數(shù)據(jù)庫特定基因或蛋白質(zhì)的數(shù)據(jù)庫nEF-hand CaBP - EF-hand calcium-binding pro

20、teins db nCAZy - Carbohydrate-Active enZYmes Web site nCBS domain - Cystathionine Beta Synthase domain WWW page nCD antigens in SWISS-PROT - Nomenclature for surface proteins of human leucocytes (CD) 2021/3/24授課：XXX20特定基因或蛋白質(zhì)的數(shù)據(jù)庫特定基因或蛋白質(zhì)的數(shù)據(jù)庫nCD antigens in PROW - Database on information about CD ant

21、igens nChaperonin - Information on GroEL and GroES chaperonins nConotoxins - Information on conotoxins from a Web site on cone shells。 etc。 2021/3/24授課：XXX21糖類相關(guān)數(shù)據(jù)庫糖類相關(guān)數(shù)據(jù)庫n CarbBank - Complex Carbohydrate Structure Database GlycoSuiteDB - Db of glycan structures nTGN - The Glycoscience Network nFCCA

22、 - Forum Carbohydrates Coming of Age nCARBHYD - Carbohydrate information WWW sites nMonosacharide browser - Space filling Fischer projection for monosaccharides 2021/3/24授課：XXX22蛋白質(zhì)翻譯后修飾相關(guān)數(shù)據(jù)庫蛋白質(zhì)翻譯后修飾相關(guān)數(shù)據(jù)庫 nO-GlycBase - O-glycosylated proteins db nPhosphoBase - Phosphorylation sites db nRESID - Db of

23、 Amino Acid Modifications 2021/3/24授課：XXX23基因表達(dá)數(shù)據(jù)庫基因表達(dá)數(shù)據(jù)庫 nASDB - Protein products and expression patterns of alternatively-spliced genes nAxeldb - Gene expression in Xenopus nBodyMap - Human and mouse gene expression data nEpoDB - Genes expressed in vertebrate RBC nFlyView - Drosophila development

24、and genetics nGene Expression Database (GXD) - Mouse gene expression and genomics nKidney Development Database - Kidney development and gene expression2021/3/24授課：XXX24基因表達(dá)數(shù)據(jù)庫基因表達(dá)數(shù)據(jù)庫 nMAGEST - Ascidian (Halocynthia roretzi) gene expression patterns nMouse Atlas and Gene Expression Database - Spatial

25、ly-mapped gene expression data nPEDB - Normal and aberrant prostate gene expression nTooth Development Database - Gene expression in dental tissue nTRIPLES - TRansposon-Insertion Phenotypes, Localization and Expression in Saccharomyces 2021/3/24授課：XXX25人類基因突變及疾病相關(guān)數(shù)據(jù)庫人類基因突變及疾病相關(guān)數(shù)據(jù)庫nHMGD - Human Gene

26、Mutation db SVD - Sequence variation db nHGBASE - Human Genic Bi-Allelic Sequences db nThe SNP consortium ndbSNP - Human single nucleotide polymorphism (SNP) db nList of mutation databases from OMIM List of mutation databases from IMT (Finland) 2021/3/24授課：XXX26人類基因突變及疾病相關(guān)數(shù)據(jù)庫人類基因突變及疾病相關(guān)數(shù)據(jù)庫nADB - Alb

27、inism db (Mutations in human genes causing albinism) Alpha-glucosidase - Information about human acid alpha-glucosidase (GSD-II) nAR mutations - Human androgen receptor mutation db nAntithrombin mutation db nAsthma and Allergy gene db nBIOMDB - Db of mutations causing tetrahydrobiopterin deficiencie

28、s nBLMbase - Human BLM mutation db (Bloom snydrom)2021/3/24授課：XXX27人類基因突變及疾病相關(guān)數(shù)據(jù)庫人類基因突變及疾病相關(guān)數(shù)據(jù)庫nBTKbase - Human BTK mutation db (X-linked agammaglobulinemia) nCD40Lbase - Human CD40 ligand mutation db nCOL1/3 mutation - Human Type I and III collagen mutation db nCFTR mutation - Human cystic fibrosis

29、 mutation db (CFTR) nEMD db - Human Emerin (EMD) mutation db (Emery-Dreifuss muscular dystrophy) nKMeyeDB - Eye disease genes db 2021/3/24授課：XXX28人類基因突變及疾病相關(guān)數(shù)據(jù)庫人類基因突變及疾病相關(guān)數(shù)據(jù)庫nFVII mutation - Human Factor VII mutation db nHAMSTeRS - Human Factor VIII mutation db (Haemophilia A) nHAeMB - Human Factor

30、IX mutation db (Haemophilia B) nFBN1 mutation - Human fibrillin 1 mutation db (Marfan syndrome) nG6PD - Human G6PD deficiency resource nGalt mutation - Human galactose-1-phosphate uridylyltransferase mutation db (Galactosemia)2021/3/24授課：XXX29人類基因突變及疾病相關(guān)數(shù)據(jù)庫人類基因突變及疾病相關(guān)數(shù)據(jù)庫nHEXAdb - Human Hexosaminidas

31、e A mutation db (Tay-sachs disease) nIL2RGbase - Human IL2RG (Interleukin-2 receptor gamma) mutation db (X-SCID) nL1CAM mutation - Human L1CAM mutation db nLDLR mutation - Human LDLR mutation db (Familial hypercholesterolemia) nLQTSdb - Long QT syndrome db nNCF1base - Human NCF1 mutation db nNCF2bas

32、e - Human NCF2 mutation db 2021/3/24授課：XXX30人類基因突變及疾病相關(guān)數(shù)據(jù)庫人類基因突變及疾病相關(guān)數(shù)據(jù)庫nNeuromuscular diseases web site nNCL - Neuronal Ceroid Lipofuscinoses mutation db nOTCase - Human ornithine transcarbamylase (OTCase) website nCytochrome P450 alleles nomenclature np53 mutation db - University of Tokyo p53 muta

33、tion db nGermline p53 mutation db - University of Prague db of germline p53 mutations nPAHdb - Human phenylalanine hydroxylase (PAH) mutation db 2021/3/24授課：XXX31人類基因突變及疾病相關(guān)數(shù)據(jù)庫人類基因突變及疾病相關(guān)數(shù)據(jù)庫nPAX6 mutation - Human PAX6 mutation db nPrion - Prion and prion disease web site nRAG1base - Human RAG1 mutat

34、ion db nRAG2base - Human RAG2 mutation db nRB1base - Human retinoblastoma-associated protein (RB) mutation db nRetNet - Retinal Information Network nRetina International Scientific Newsletter - Information on Retinal genes, proteins and diseases 2021/3/24授課：XXX32人類基因突變及疾病相關(guān)數(shù)據(jù)庫人類基因突變及疾病相關(guān)數(shù)據(jù)庫nTSC - TS

35、C (TSC1/TSC2) variation db nTSC2 - Cardiff-Rotterdam Tuberous Sclerosis (TS) db (Tuberin; TSC2) nTGDB - Tumor gene db nVMD2 mutation - Human VMD2 mutation db nvWF mutation - Human von Willebrand factor (vWF) mutation db nWRN - Human WRN mutation db (Warner disease) nWT1 mutation - Human WT1 mutation

36、 db nX-ALD mutation - Human ABCD1 mutation db 2021/3/24授課：XXX33進(jìn)化相關(guān)數(shù)據(jù)庫及資源進(jìn)化相關(guān)數(shù)據(jù)庫及資源 nClusters of Orthologous Groups (COG) - Phylogenetic classification of proteins from 21 complete genomes nXREFdb - Cross-referencing of model organism genetics with mammalian phenotypes nTreeBASE - Relational db of p

37、hylogenetic informationnThe Tree of life - Collection of WWW pages on phylogeny and biodiversity of organisms 2021/3/24授課：XXX34專利數(shù)據(jù)庫專利數(shù)據(jù)庫 nDPD - DNA Patent db nAg Patents - Agricultural Biotechnology patents from the USDA nUSPTO patent db - USA Patent and Trademark Office patent db nEspcenet - Paten

38、t information database from the European Patent Office (worldwide coverage) nThe Delphion Intellectual Property Network (IPN) for searching, viewing, and analyzing patent documents. 2021/3/24授課：XXX35資源目錄服務(wù)器或網(wǎng)頁資源目錄服務(wù)器或網(wǎng)頁nBioCatalog - The BioCatalog at EBI nYellow BAGI - Bio Access Guide to the Intern

39、et at Houston University nSoftware library from G nDBCAT - Databases catalog at INFOBIOGEN nMBDL - Molecular Biology Database List nAmos WWW links page nNucleic Acids Research database issue2021/3/24授課：XXX36Human nCEPH-genotype databasenCEPH home page - a research laboratory which constructs maps of

40、 the human genomenGeneMap99 - A Gene Map of the Human Genome (NCBI) nOMIM - Online Mendelian Inheritance in Man nGENATLAS - Human genes atlas nGeneClinics - Medical genetics knowledge base nGDB - Human genes and genomic maps nGeneCards - Db integrating information on human genes 2021/3/24授課：XXX37Hum

41、an nUDB - Unified db for Human genome mapping nEnsembl - Human genome annotations site nUCSC human genome working draft nTIGR HGI - TIGR Human Gene Index nHuman BAC Ends Database - Non-redundant human BAC end sequences nHs UniGene - Human transcripts in GenBank (EST clusters) nSTACK - Sequence Tag A

42、lignment and Consensus Knowledgebase (Db of consensus human ESTs) 2021/3/24授課：XXX38Human nAllgenes.org - Human predicted gene index/catalog nGenLink - Human genetics resource nGENOTK - Human cDNA db nHUGE - Human Unidentified Gene-Encoded large proteins cDNA (KIAA.) nCGAP - Cancer Genome Anatomy Pro

43、ject nSCDb - Stem cell db 2021/3/24授課：XXX39Human nHuGeMap - Human genome genetic and physical map data nG3-RH - Stanford G3 and TNG radiation hybrid maps nGB4-RH - Genebridge4 (GB4) human radiation hybrid maps nRadiation Hybrid Database - Radiation hybrid map data 2021/3/24授課：XXX40 Human chromosome

44、18nChr1 - Human chromosome 1 at Rockefeller University Mirror at EBI nChr3 - Human chromosome 3 db at the University of Texas Health Science Center nChr7 - Human chromosome 7 db at Ontarios Hospital for Sick Children nChr8 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 8 2021/3/

45、24授課：XXX41Human chromosome911nChr9 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 9 nChr9 - Human chromosome 9 db nChr10 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 10 nGTC Chr10 data - Human chromosome 10 data from Genome Therapeutics Corporation nChr11

46、SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 11 n11DB - Human chromosome 11 db at Imperial College (U.K.) 2021/3/24授課：XXX42Human chromosome1216nChr12 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 12 nChr13 - Human chromosome 13 db at Columbia nChr14 SWISS

47、-PROT list - Links to SWISS-PROT entries from human chromosome 14 nChr15 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 15 nChr15 UBC - Human chromosome 15 WWW page at UBC nChr16 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 162021/3/24授課：XXX43Human chromos

48、ome1619 nChr16 LANL - Human chromosome 16 db at Los Alamos National Laboratory nChr16 TIGR - Human chromosome 16 db at TIGR nChr17 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 17 nChr18 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 18 nChr18 - Human chrom

49、osome 18 at Boston Childrens Hospital nChr19 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 19 2021/3/24授課：XXX44Human chromosome2022nChr20 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 20 nChr21 SWISS-PROT list - Links to SWISS-PROT entries from human chrom

50、osome 21 nChr21 at RIKEN - Human chromosome 21 genome site at RIKEN (Japan) nChr21 at ERI - Human chromosome 21 genomic sequence db from the Eleanor Roosevelt Institute nChr22 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 22 nChr22 at Sanger - Sanger Center chromosome 22 projec

51、t nChr22 at HGC - Human genome center for chromosome 22 2021/3/24授課：XXX45Human chromosomeXYnChrX SWISS-PROT list - Links to SWISS-PROT entries from human chromosome X nIXDB - Integrated X chromosome db nChrY SWISS-PROT list - Links to SWISS-PROT entries from human chromosome Y nnDRESH - Human cDNA c

52、lones homologous to Drosophila mutant genes2021/3/24授課：XXX46Vertebrates nOMIA - Online Mendelian Inheritance in Animals nMGI - Mouse Genome Informatics (includes Mouse Genome Database (MGD)Mirrors in Australia | UK | Japan nTIGR MGI - TIGR Mouse Gene Index nMm UniGene - Mouse transcripts in GenBank

53、(EST clusters) nRatMAP - Rat genome db nTIGR RGI - TIGR Rat Gene Index nRn Unigene - Rat transcripts in GenBank (EST clusters) 2021/3/24授課：XXX47Vertebrates nBovBASE - Bovine genome db (in UK) nBOVMAP - Bovine genome db (in France) nArk-Cat - Cat genome db nHorseBASE - Horse genome db nDGP - Dog Geno

54、me Project nPiGBASE - Pig genome db nSheepBASE - Sheep genome db (also known as SheepMap) Mirror in UK nMIS - Mendelian Inheritance in Sheep nChickGBASE - Chicken genome db 2021/3/24授課：XXX48VertebratesnFugu - HGMP Resource Centre Fugu Project (Fugu rubripes) nMedakafish - Mekada fish (Oryzias latipe

55、s) server nArk-Tilapia - Tilapia mossambica genome db nThe fish net - Zebrafish server nFishBase - Global information system on fishes 2021/3/24授課：XXX49Mitochondrion and chloroplast nGOBASE - Organelle Genome Database nMitoDat - Mendelian Inheritance and the Mitochondrion db (mitochondrial nuclear g

56、enes) nMITOMAP - Human mitochondrial genome db nMmtDB - Metazoa mitochondrial DNA variants db nMitBASE - Integrated mitochondrial DNA db nMitBASE-Pilot - Db of S.cerevisiae nuclear genes involved in mitochondrial biogenesis nHvrBase - Primates mtDNA control region sequences compilation2021/3/24授課：XX

57、X50Mitochondrion and chloroplastnMOUSE - Mitochondrial and Other Useful SEquences (human and apes mit. DNA db) nMITOP - Mitochondrial proteins, genes and diseases nAMmtDB - Metazoan mitochondrial DNA sequences 2021/3/24授課：XXX51InsectsnDrosophila SWISS-PROT list - Links to Drosophila SWISS-PROT entri

58、es nFlyBase - Drosophila genetic and molecular db Mirror at EBI nFlyView - Drosophila image db nGIFTS - Gene Interactions in the Fly Trans-World Server nFlyNets - Db of molecular interactions in Drosophila melanogaster nSOS-DGBD - Db of Drosophila DNA sequences annotated with regulatory binding site

59、s nMosquito Genomics 2021/3/24授課：XXX52InvertebratesnWormBase - C.elegans db Mirror at Sanger nC.elegans WWW server - at University of Texas Southwestern nACeDb - Caenorhabditis elegans db nC.elegans Mitochondrial Directory - Data on C.elegans genes for mitochondrial proteins nC.elegans EST - C.elega

60、ns EST db from Japan (Yuji Koharas group) nC.elegans SWISS-PROT list - Links to C.elegans SWISS-PROT entries nWormPep - C.elegans proteins db nWormPD - C.elegans protein db 2021/3/24授課：XXX53InvertebratesnDictystelium Genome Sequencing project at BCM nDictyostelium discoideum genome project at IENA n

61、DictyDb - Dictyostelium discoideum db nDicty_cDB - Dictyostelium discoideum cDNA project nCone shells Web site nParasite genomes db and resources nParasite genomes WWW site nPlasmoDB - P.falciparum genome db 2021/3/24授課：XXX54InvertebratesnMalaria - WHO - Malaria db (from WHO) （瘧疾nue）nP.falciparum Sa

62、nger - P.falciparum genome project at Sanger nPFDB - Plasmodium falciparum Genome db （瘧原蟲）nP.falciparum - Plasmodium falciparum Gene Sequence Tag project 2021/3/24授課：XXX55InvertebratesnMAD - Malaria Antigen db nMalaria parasite metabolic pathways nLGN - Leishmania Genome Network nTrypanosoma brucei

63、genome project nTrypanosoma cruzi genome project nkDNA - Kinetoplast Minicircle Sequence db 2021/3/24授課：XXX56PlantsnNAL - AGIS - Access to many plant genome databases at the National Agricultural Library nDemeters genomes - Access to many plant genome databases at the USDA-ARS nMendel - Plant gene n

64、omenclature database from CPGN nAtDB - Arabidopsis thaliana genome database nTAIR - The Arabidopsis Information Resource nMATDB - MIPS Arabidopsis thaliana db nTIGR AtGI - TIGR Arabidopsis thaliana Gene Index nAGR - Arabidopsis Genome Resource 2021/3/24授課：XXX57PlantsnBeanGenes - Beans genome db （豆）n

65、BeanRef - Beans genome db and other resources nChlamyDB - Chlamydomonas reinhardtii genome db衣藻(分類地位有爭議的綠色雙鞭毛單細(xì)胞生物)nCropNet - Genome mapping in crop plants nCottonDB - Cotton genome db （棉花）nMaizeDb - Maize genome db （玉米）nINRA Maize - INRA Maize genome db nZmDB - Maize genome database nPisum sativum

66、(pea) web site（豌豆）2021/3/24授課：XXX58Plants-Rice nRGP - Rice Genome Research Program nRiceGenes nRice-research.org - Monsanto rice genome site nTIGR OsGI - TIGR Rice Gene Index nTIGR GmGI - TIGR Soybean Gene Index nSnapdragon (A.majus) web site nSorghumDB - Sorghum genome db （高粱）nSoyBase - Soybean genome db （大豆）2021/3/24授課：XXX59PlantsnSoyBase metabolic db - Metabolic subset of the soybean genome db nTIGR LeGI - TIGR Tomato Gene Index nDendrome - Forest trees genome db 2021/3/24授課：XXX60FunginFGSC -